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Beyond homopolymer errors: a systematic investigation of Nanopore-based DNA sequencing characteristics using HLA-DQA2

Sárközy, Péter and Molnár, Viktor and Fogl, Dóra and Szalai, Csaba and Antal, Péter (2017) Beyond homopolymer errors: a systematic investigation of Nanopore-based DNA sequencing characteristics using HLA-DQA2. Periodica Polytechnica Electrical Engineering and Computer Science, 61 (3). pp. 231-237. ISSN 20645260

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Abstract

Electronic, nanopore based single molecule real-time DNA sequencing technology offers very long, albeit lower accuracy reads in sharp contrast to existing next-generation sequencing methods, which offer short, high-accuracy reads in abundance. We provide a systematic review of the error characteristics of this new sequencing platform, and demonstrate the most challenging aspects in the field of whole gene sequencing through the human HLA-DQA2 gene using long-range PCR products on multiplexed samples. We consider the limitations of these errors for the applications of this technology, and also indicate prospective improvements and expected thresholds with respect to these errors.

Item Type: Article
Subjects: Q Science / természettudomány > QA Mathematics / matematika > QA75 Electronic computers. Computer science / számítástechnika, számítógéptudomány
Q Science / természettudomány > QA Mathematics / matematika > QA76 Computer software / programozás
T Technology / alkalmazott, műszaki tudományok > TK Electrical engineering. Electronics Nuclear engineering / elektrotechnika, elektronika, atomtechnika
Depositing User: Peter Antal
Date Deposited: 01 Oct 2017 18:32
Last Modified: 01 Oct 2017 18:32
URI: http://real.mtak.hu/id/eprint/64673

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