Deciphering novel QTL for spectral reflectance indices in spring wheat

Barakat, Mohamed and Al-Doss, Abdullah and El-Hendawy, Salah and Al-Suhaibani, Nasser and Abdella, Kamel and Al-Ashkar, Ibrahim (2021) Deciphering novel QTL for spectral reflectance indices in spring wheat. CEREAL RESEARCH COMMUNICATIONS, 49 (4). pp. 649-661. ISSN 0133-3720 (print), 1788-9170 (online)

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Abstract

Drought is a common abiotic stress factor that seriously affects wheat production in many parts of the world. To identify stable QTLs associated with three morphophysiological traits and four spectral reflectance indices (SRIs) in F6 (previous research) and F7 generations, recombinant inbred line (RIL) population from the cross between drought-sensitive (Yecora Rojo) and drought-tolerant (Pavon 76) cultivars was used in a study conducted under two irrigation regimes at the King Saud University Agricultural, Research Station. The parents and RILs were genotyped using a set of microsatellite loci. The composite interval mapping (CIM) analysis detected 53 QTLs for the three morphophysiological traits and four SRIs. The phenotypic variance (PV) explained varied from 3 to 44%. Twelve co-located QTLs were identified on chromosomes: 1B, 1D, 2A, 2D, 3A, 3B, 4B, 5B and 5D. The highest number of co-located QTLs was identified on chromosomes 5B. The QTL on chromosome 5B flanked by barc109–barc59 showed significant effects for the morphophysiological traits and SRIs under the two irrigation regimes. This QTL explained the highest proportion of PV (14.0–44.0%) with LOD score (3.2–13.2). Seven stable QTLs were identified in both F6 and F7 generations. Of these QTLs, QWc.li-5B co-localized with QNdvi.li-5B and flanked by markers Barc109 and Barc59 was identified in F6 and F7 generations under reduced irrigation. QWc.li-5B explained the highest PV (43 and 44%) for relative water content in F6 and F7 RIL, respectively. The novel and consistent QTLs obtained can be used in marker-assisted selection to improve drought tolerance in wheat.

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