Unraveling transcriptome profile, epigenetic dynamics, and morphological changes in psoriasis-like keratinocytes: "Insights into similarity with psoriatic lesional epidermis"

Ghaffarinia, Ameneh and Póliska, Szilárd and Ayaydin, Ferhan and Göblös, Anikó and Parvaneh, Shahram and Manczinger, Máté and Balogh, Fanni and Erdei, Lilla and Veréb, Zoltán and Szabó, Kornélia Ágnes and Csörgő Sándorné Bata, Zsuzsanna and Kemény, Lajos (2023) Unraveling transcriptome profile, epigenetic dynamics, and morphological changes in psoriasis-like keratinocytes: "Insights into similarity with psoriatic lesional epidermis". CELLS, 12 (24). No-2825. ISSN 2073-4409

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Abstract

Keratinocytes are one of the primary cells affected by psoriasis inflammation. Our study aimed to delve deeper into their morphology, transcriptome, and epigenome changes in response to psoriasis-like inflammation. We created a novel cytokine mixture to mimic mild and severe psoriasis-like inflammatory conditions in cultured keratinocytes. Upon induction of inflammation, we observed that the keratinocytes exhibited a mesenchymal-like phenotype, further confirmed by increased VIM mRNA expression and results obtained from confocal microscopy. We performed RNA sequencing to achieve a more global view, revealing 858 and 6987 DEGs in mildly and severely inflamed keratinocytes, respectively. Surprisingly, we found that the transcriptome of mildly inflamed keratinocytes more closely mimicked that of the psoriatic epidermis transcriptome than the severely inflamed keratinocytes. Genes involved in the IL-17 pathway were a major contributor to the similarities of the transcriptomes between mildly inflamed KCs and psoriatic epidermis. Mild and severe inflammation led to the gene regulation of epigenetic modifiers such as HATs, HDACs, DNMTs, and TETs. Immunofluorescence staining revealed distinct 5-hmC patterns in inflamed versus control keratinocytes, and consistently low 5-mC intensity in both groups. However, the global DNA methylation assay detected a tendency of decreased 5-mC levels in inflamed keratinocytes versus controls. This study emphasizes how inflammation severity affects the transcriptomic similarity of keratinocytes to psoriatic epidermis and proves dynamic epigenetic regulation and adaptive morphological changes in inflamed keratinocytes.

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