Discovery of Undescribed Clerodane Diterpenoids with Antimicrobial Activity Isolated from the Roots of Solidago gigantea Ait

Baglyas, Márton and Bozsó, Zoltán and Schwarczinger, Ildikó and Ott, Péter and Bakonyi, József and András, Darcsi and Móricz, Ágnes (2025) Discovery of Undescribed Clerodane Diterpenoids with Antimicrobial Activity Isolated from the Roots of Solidago gigantea Ait. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 26 (18). No.-9187. ISSN 1661-6596 (In Press)

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Abstract

Three previously undescribed clerodane diterpenoids, including two cis-clerodanes, solidagolactone IX (1) and solidagoic acid K (2), and one trans-clerodane, solidagodiol (3), along with two known cis-clerodane diterpenoids, (−)-(5R,8R,9R,10S)-15,16-epoxy-ent-neocleroda-3,13,14-trien-18-ol (4) and solidagoic acid J (5), were isolated and comprehensively characterized from the ethanolic and ethyl acetate root extract of Solidago gigantea Ait. (giant goldenrod). Compound 4 has previously been reported from the roots of this species, whereas compound 5 was identified from the leaves of S. gigantea but not from the roots. The bioassay-guided isolation involved thin-layer chromatography–direct bioautography (TLC–DB) with a Bacillus subtilis antibacterial assay, preparative flash column chromatography, and TLC–mass spectrometry (MS). The chemical structures of the isolated compounds (1–5) were elucidated through extensive in-depth spectroscopic and spectrometric analyses, including one- and two-dimensional nuclear magnetic resonance (NMR) spectroscopy, high-resolution tandem mass spectrometry (HRMS/MS), and attenuated total reflectance Fourier-transform infrared (ATR–FTIR) spectroscopy. Their antimicrobial activities were evaluated using in vitro microdilution assays against B. subtilis and different plant pathogens. Compound 3 was the most active against the tested Gram-positive strains, exerting particularly potent effects against Clavibacter michiganensis with a minimal inhibitory concentration (MIC) value of 5.1 µM as well as B. subtilis and Curtobacterium flaccumfaciens pv. flaccumfaciens (MIC 21 µM for both). Compound 4 also strongly inhibited the growth of C. michiganensis (MIC 6.3 µM). Compounds 2, 4, and 5 displayed moderate to weak activity against B. subtilis and C. flaccumfaciens pv. flaccumfaciens with MIC values ranging from 100 to 402 µM. Rhodococcus fascians bacteria were moderately inhibited by compounds 3 (MIC 41 µM) and 4 (MIC 201 µM). Bactericidal activity was observed for compound 3 against C. michiganensis with a minimal bactericidal concentration (MBC) value of 83 µM. Compounds 2 and 3 demonstrated weak antifungal activity against Fusarium graminearum. Our findings underscore the value of bioassay-guided approaches in discovering previously undescribed bioactive compounds.

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