Items where Author is "Szilágyi, András"

Article

Könnyű, Balázs and Szathmáry, Eörs and Czárán, Tamás and Szilágyi, András (2024) Kinetics and coexistence of autocatalytic reaction cycles. SCIENTIFIC REPORTS, 14. No.-18441. ISSN 2045-2322

Paczkó, Mátyás and Szathmáry, Eörs and Szilágyi, András (2024) Stochastic parabolic growth promotes coexistence and a relaxed error threshold in RNA-like replicator populations. ELIFE, 13. No. RP93208. ISSN 2050-084X

Paczkó, Mátyás and Vörös, Dániel and Szabó, Péter and Jékely, Gáspár and Szathmáry, Eörs and Szilágyi, András (2024) A neural network-based model framework for cell-fate decisions and development. COMMUNICATIONS BIOLOGY, 7. No.-323. ISSN 2399-3642

Szilágyi, András and Czárán, Tamás and Santos, Mauro and Szathmáry, Eörs (2023) Directional selection coupled with kin selection favors the establishment of senescence. BMC BIOLOGY, 21 (230). ISSN 1741-7007

Szilágyi, Barnabás Áron and Gyarmati, Benjámin Sándor and Kiss, L. Eszter and Budai-Szűcs, Mária and Misra, Anil and Csányi, Erzsébet and László, Krisztina and Szilágyi, András (2023) In situ gelation of thiolated poly(aspartic acid) derivatives through oxidant-free disulfide formation for ophthalmic drug delivery. COLLOIDS AND SURFACES B: BIOINTERFACES. ISSN 0927-7765

Szilágyi, András and Kovács, Viktor and Czárán, Tamás and Szathmáry, Eörs (2023) Evolutionary ecology of language origins through confrontational scavenging. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B - BIOLOGICAL SCIENCES, 378 (1872). No.-20210411. ISSN 0962-8436 (print); 1471-2970 (online)

Krishnan, Nandakishor and Rózsa, Lajos and Szilágyi, András and Garay, József (2023) Coevolutionary Stability of Host-Symbiont Systems with Mixed-Mode Transmission. JOURNAL OF THEORETICAL BIOLOGY. pp. 1-26. ISSN 0022-5193 (print); 1095-8541 (online) (In Press)

Stankovits, Gergely and Ábrahám, Ágnes and Kiss, Éva and Varga, Zoltán and Misra, Anil and Szilágyi, András and Gyarmati, Benjámin (2023) The Interaction Between Mucin and Poly(amino acid)s with Controlled Cationic Group Content in Bulk Phase and in Thin Layers. INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES : STRUCTURE, FUNCTION AND INTERACTIONS. No.-126826. ISSN 0141-8130 (print); 1879-0003 (online) (In Press)

Podani, János and Patonai, Katalin and Szabó, Péter and Szilágyi, András (2022) Coefficients of association between nominal and fully ranked ordinal variables with applications to ecological network analysis. ECOLOGICAL MODELLING, 466. No.-109873. ISSN 0304-3800

Szilágyi, András (2022) Clipeus Christianitatis : Egy nagymúltú európai szállóige képi megjelenítésének változatai Magyarországon a 17. század második felében és a 18. század elején = Clipeus Christianitatis : Variants of the Visualization of a Time-Honoured European Adage in Hungary in the Second Part of the 17th and Early 19th Centuries. MŰVÉSZETTÖRTÉNETI ÉRTESÍTŐ, 71 (2). pp. 199-212. ISSN 0027-5247 (nyomtatott); 1588-2802 (elektronikus)

Szilágyi, András (2022) Propugnaculum sive Clipeus Christianitatis : Bildliche Darstellungsvarianten eines Europaweit Bekannten Geflügelten Wortes von Großer Vergangenheit in der Zweiten Hälfte des 17. Jahrhunderts und zu Beginn Des 18. Jahrhunderts. ACTA HISTORIAE ARTIUM ACADEMIAE SCIENTIARUM HUNGARICAE, 63 (1). pp. 297-326. ISSN 0001-5830

Gyarmati, Benjámin and Dargó, Gergő and Szilágyi, Barnabás Áron and Vincze, Anna and Facskó, Réka and Budai-Szűcs, Mária and L. Kiss, Eszter and Szente, Lajos and Szilágyi, András and Balogh, György T, (2022) Synthesis, complex formation and corneal permeation of cyclodextrin-modified, thiolated poly(aspartic acid) as self-gelling formulation of dexamethasone. EUROPEAN JOURNAL OF PHARMACEUTICS AND BIOPHARMACEUTICS, 174. pp. 1-9. ISSN 0939-6411

Mammadova, Aysel and Gyarmati, Benjámin and Sárdi, Kitti and Paudics, Adrien and Varga, Zoltán and Szilágyi, András (2022) Thiolated cationic poly(aspartamides) with side group dependent gelation properties for the delivery of anionic polyelectrolytes. JOURNAL OF MATERIALS CHEMISTRY B, 10 (31). pp. 5946-5957. ISSN 2050-750X

Gyarmati, Benjámin and Stankovits, Gergely and Szilágyi, Barnabás Áron and Galata, Dorián László and Gordon, Péter and Szilágyi, András (2022) A robust mucin-containing poly(vinyl alcohol) hydrogel model for the in vitro characterization of mucoadhesion of solid dosage forms. COLLOIDS AND SURFACES B: BIOINTERFACES, 213. pp. 1-10. ISSN 0927-7765

Rezende, Enrico L and Bozinovic, Franciso and Szilágyi, András and Santos, Mauro (2020) Predicting temperature mortality and selection in natural Drosophila populations. Science, 369. pp. 1242-1245. ISSN 0036-8075 (print) 1095-9203 (online)

Gyarmati, Benjámin and Mammadova, Aysel and Stankovits, Gergely and Barczikai, Dóra and Szilágyi, András (2020) Effect of side groups on the hydrolytic stability of thiolated and disulfide cross-linked polyaspartamides. PERIODICA POLYTECHNICA CHEMICAL ENGINEERING. ISSN 0324-5853 (print); 1587-3765 (online) (In Press)

Szilágyi, András and Könnyű, Balázs and Czárán, Tamás (2020) Dynamics and stability in prebiotic information integration: an RNA World model from first principles. SCIENTIFIC REPORTS, 10. No. 51. ISSN 2045-2322

Balogh, Andrea and Reiniger, Lilla and Hetey, Szabolcs and Király, Péter and Tóth, Eszter and Karászi, Katalin and Juhász, Kata and Gelencsér, Zsolt and Zvara, Ágnes and Szilágyi, András and Puskás, László and Matkó, János and Papp, Zoltán and Kovalszky, Ilona and Juhász, Csaba and Than, Nándor Gábor (2020) Decreased Expression ofZNF554in Gliomas is Associated with the Activation of Tumor Pathways and Shorter Patient Survival. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 21 (16). ISSN 1661-6596

Németh, Csaba and Gyarmati, Benjámin and Gacs, Jenő and Salakhieva, Diana V. and Molnár, Kolos and László, Krisztina and Szilágyi, András (2020) Fast dissolving nanofibrous matrices prepared by electrospinning of polyaspartamides. European Polymer Journal, 130. pp. 1-9. ISSN 0014-3057

Paudics, Adrien and Farah, Shereen and Bertóti, Imre and Farkas, Attila and László, Krisztina and Mohai, Miklós and Sáfrán, György and Szilágyi, András and Kubinyi, Miklós (2020) Fluorescence probing of binding sites on graphene oxide nanosheets with Oxazine 1 dye. APPLIED SURFACE SCIENCE. pp. 1-9. ISSN 0169-4332

Adamski, Paul and Eleveld, Marcel and Sood, Ankush and Kun, Ádám and Szilágyi, András and Czárán, Tamás and Szathmáry, Eörs (2020) From self-replication to replicator systems en route to de novo life. NATURE REVIEWS CHEMISTRY, 4. ISSN 2397-3358

Csörgőné Szabó, Szilvia and Karászi, Katalin and Romero, Roberto and Tóth, Eszter and Szilágyi, András and Gelencsér, Zsolt and Balogh, Andrea and Hunyadi-Gulyás, Éva Csilla and Darula, Zsuzsanna and Kékesi, Adrienna Katalin and Juhász, Gábor Dénes and Papp, Zoltán and Than, Nándor Gábor (2020) Proteomic identification of placental protein 1 (PP1), PP8, and PP22 and characterization of their placental expression in healthy pregnancies and in preeclampsia. PLACENTA, 99. pp. 197-207. ISSN 0143-4004

Tormási, Imre György and Kun, Szilárd and Szilágyi, András and Wittmann, István (2020) Tirozin-izoformák egészséges és gestatiós diabeteses anyákból származó placentákban [Isoforms of tyrosine in the placenta of healthy pregnants and of patients with gestational diabetes]. DIABETOLOGIA HUNGARICA, 28 (1). pp. 45-49. ISSN 1217-372X

Scheuring, István and Szilágyi, András (2019) Diversity, stability, and evolvability in models of early evolution. Current Opinion in Systems Biology, 13. pp. 115-121. ISSN 2452-3100

King, Jennifer R. and Wilson, Melissa L. and Hetey, Szabolcs and Király, Péter and Matsuo, Koji and Castaneda, Antonio V. and Tóth, Eszter and Krenács, Tibor and Hupuczi, Petronella and Mhawech-Fauceglia, Paulette and Balogh, Andrea and Szilágyi, András and Matkó, János and Papp, Zoltán and Roman, Lynda D. and Cortessis, Victoria K. and Than, Nándor Gábor (2019) Dysregulation of Placental Functions and Immune Pathways in Complete Hydatidiform Moles. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 20 (20). ISSN 1661-6596

Vig-Milkovics, Zsuzsanna and Zachar, István and Kun, Ádám and Szilágyi, András and Szathmáry, Eörs (2019) Moderate sex between protocells can balance between a decrease in assortment load and an increase in parasite spread. JOURNAL OF THEORETICAL BIOLOGY, 462. pp. 304-310. ISSN 0022-5193

Szimler, Tamás and Gráczer, Éva Laura and Györffy, Dániel and Végh, Barbara and Szilágyi, András and Hajdú, István and Závodszky, Péter and Kazinczyné Vas, Mária (2019) New type of interaction between the SARAH domain of the tumour suppressor RASSF1A and its mitotic kinase Aurora A. SCIENTIFIC REPORTS, 9 (1). ISSN 2045-2322

Balogh, Andrea and Kárpáti, Éva and Schneider, Andrea and Hetey, Szabolcs and Szilágyi, András and Juhász, Kata and László, Glória and Matkó, János and Than, Nándor Gábor (2019) Sex hormone-binding globulin provides a novel entry pathway for estradiol and influences subsequent signaling in lymphocytes via membrane receptor. SCIENTIFIC REPORTS, 9. ISSN 2045-2322

Zachar, István and Szilágyi, András and Számadó, Szabolcs and Szathmáry, Eörs (2018) Farming the mitochondrial ancestor as a model of endosymbiotic establishment by natural selection. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. pp. 1-7. ISSN 0027-8424

Garay, József and Csiszár, Villő and Móri, Tamás F. and Szilágyi, András and Varga, Zoltán and Számadó, Szabolcs (2018) Juvenile honest food solicitation and parental investment as a life history strategy: A kin demographic selection model. PLOS ONE, 13 (3). pp. 1-13. ISSN 1932-6203

Zachar, István and Szilágyi, András and Számadó, Szabolcs and Szathmáry, Eörs (2018) Reply to Garg and Martin: The mechanism works. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 115 (20). E4545-E4546. ISSN 0027-8424

Szilágyi, András and Terdik, Szilveszter (2018) Szilárdfy Zoltán, a művészettörténész. Művészettörténeti Értesítő, 67 (2). pp. 297-303. ISSN 0027-5247

Szilágyiné Móréh, Ágnes and Szilágyi, András and Scheuring, István and Müller, Viktor (2018) Variable Effect of HIV Superinfection on Clinical Status: Insights From Mathematical Modeling. FRONTIERS IN MICROBIOLOGY, 9. p. 1634. ISSN 1664-302X

Podani, János and Kun, Ádám and Szilágyi, András (2017) How fast does Darwin’s elephant population grow? Journal of the History of Biology. pp. 1-23. ISSN 0022-5010

Szilágyi, András and Boza, Gergely and Scheuring, István (2017) Analysis of stability to cheaters in models of antibiotic degrading microbial communities. JOURNAL OF THEORETICAL BIOLOGY, 423. pp. 53-62. ISSN 0022-5193

Szilágyi, András and Boza, Gergely and Scheuring, István (2017) Analysis of stability to cheaters in models of antibiotic degrading microbial communities. JOURNAL OF THEORETICAL BIOLOGY, 423. pp. 53-62. ISSN 0022-5193

Gyimesi, Gergely and Závodszky, Péter and Szilágyi, András (2017) Calculation of Configurational Entropy Differences from Conformational Ensembles Using Gaussian Mixtures. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 13 (1). pp. 29-41. ISSN 1549-9618

Fedor, Anna and Zachar, István and Szilágyi, András and Öllinger, Michael and de Vladar, Harold P. and Szathmáry, Eörs (2017) Cognitive architecture with evolutionary dynamics solves insight problem. FRONTIERS IN PSYCHOLOGY, 8. p. 427. ISSN 1664-1078

Szilágyi, András and Zachar, István and Scheuring, István and Kun, Ádám and Könnyű, Balázs and Czárán, Tamás (2017) Ecology and Evolution in the RNA World Dynamics and Stability of Prebiotic Replicator Systems. LIFE, 7. pp. 1-32. ISSN 0024-3019

Németh, Csaba and Szabó, Dóra and Gyarmati, Benjámin and Gerasimov, Alexander and Varfolomeev, Mikhail and László, Krisztina and Szilágyi, András (2017) Effect of side groups on the properties of cationic polyaspartamides. EUROPEAN POLYMER JOURNAL, 93. pp. 805-814. ISSN 0014-3057

Oroszlán, Gábor and Dani, Ráhel and Szilágyi, András and Závodszky, Péter and Thiel, Steffen and Gál, Péter and Dobó, József (2017) Extensive Basal Level Activation of Complement Mannose-Binding Lectin-Associated Serine Protease-3: Kinetic Modeling of Lectin Pathway Activation Provides Possible Mechanism. FRONTIERS IN IMMUNOLOGY, 8. pp. 1-14. ISSN 1664-3224

Németh, Csaba and Gyarmati, Benjámin and Abdullin, Timur and László, Krisztina and Szilágyi, András (2017) Poly(aspartic acid) with adjustable pH-dependent solubility. ACTA BIOMATERIALIA, 49. pp. 486-494. ISSN 1742-7061 (print); 1878-7568 (online)

Szilágyi, András and Györffy, Dániel and Závodszky, Péter (2017) Segment swapping aided the evolution of enzyme function: The case of uroporphyrinogen III synthase. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 85 (1). pp. 46-53. ISSN 0887-3585

Matsumura, Shigeyoshi and Kun, Ádám and Ryckelynck, Michael and Coldren, Faith and Szilágyi, András and Jossinet, Fabrice and Rick, Christian and Nghe, Philippe and Szathmáry, Eörs and Griffiths, Andrew (2016) Transient compartmentalization of RNA replicators prevents extinction due to parasites. SCIENCE, 354 (6317). pp. 1293-1296. ISSN 0036-8075

Szilágyi, András and Zachar, István and Fedor, Anna and de Vladar, Harold P. and Szathmáry, Eörs (2016) Breeding novel solutions in the brain: a model of Darwinian neurodynamics. F1000RESEARCH, 5. p. 2416. ISSN 2046-1402

Podani, János and Szilágyi, András (2016) Bad math in Linnaeus’ Philosophia botanica. History and Philosophy of the Life Sciences, 38 (10). ISSN 0391-9714

Szilágyi, András and Zachar, István and Fedor, Anna and Vladar, Harold P. de and Szathmáry, Eörs (2016) Breeding novel solutions in the brain. F1000RESEARCH, 2016. pp. 1-20. ISSN 2046-1402

Abrusán, György and Yant, S. R. and Szilágyi, András and Marsh, J. A. and Mátés, Lajos (2016) Structural Determinants of Sleeping Beauty Transposase Activity. MOLECULAR THERAPY, 24 (8). pp. 1369-1377. ISSN 1525-0016

Szilágyi, András and Jakab, Attila and Molvarec, Attila (2016) A nőgyógyászati endokrinológia legújabb eredményei, fejlődési irányai. MAGYAR NŐORVOSOK LAPJA, 79 (1). pp. 21-29. ISSN 0025-021X

Kun, Ádám and Szilágyi, András and Könnyű, Balázs and Zachar, István and Boza, Gergely and Szathmáry, Eörs (2015) The dynamics of the RNA world : Insights and challenges. Annals of the New York Academy of Sciences, 1341. pp. 75-95.

Boza, Gergely and Szilágyi, András and Kun, Ádám and Santos, Mauro and Szathmáry, Eörs (2014) Evolution of the division of labor between genes and enzymes in the RNA world. PLOS COMPUTATIONAL BIOLOGY, 10 (12). e1003936. ISSN 1553-734X

Szilágyi, András and Kun, Ádám and Szathmáry, Eörs (2014) Local Neutral Networks Help Maintain Inaccurately Replicating Ribozymes. PLOS ONE, 9 (10). e109987. ISSN 1932-6203

Gráczer, Éva and Bacsó, András and Kónya, Dénes and Kazi, Adrian and Soós, Tibor and Molnár, Laura and Szimler, Tamás and Beinrohr, Laszló and Szilágyi, András and Závodszky, Péter and Vas, Mária (2014) Drugs Against Mycobacterium tuberculosis 3-Isopropylmalate Dehydrogenase Can be Developed Using Homologous Enzymes as Surrogate Targets. Protein and peptide letters, 21 (12). pp. 1295-307. ISSN 1875-5305

Than, Nándor Gábor and Balogh, Andrea and Romero, Roberto and Kárpáti, Éva and Offer, Offer and Szilágyi, András and Kovalszky, Ilona and Matkó, János and Závodszky, Péter and Papp, Zoltán (2014) Placental Protein 13 (PP13) – a placental immunoregulatory galectin protecting pregnancy. FRONTIERS IN IMMUNOLOGY, 5. p. 348.

Szilágyi, András and Zhang, Yang (2014) Template-based structure modeling of protein-protein interactions. CURRENT OPINION IN STRUCTURAL BIOLOGY, 24 (1). pp. 10-23. ISSN 0959-440X

Szilágyi, András and Nussinov, Ruth and Csermely, Péter (2013) Allo-network drugs: Extension of the allosteric drug concept to protein-protein interaction and signaling networks. CURRENT TOPICS IN MEDICINAL CHEMISTRY, 13 (1). pp. 64-77. ISSN 1568-0266

Csermely, Péter and Nussinov, Ruth and Szilágyi, András (2013) From allosteric drugs to allo-network drugs: State of the art and trends of design, synthesis, and computational methods. CURRENT TOPICS IN MEDICINAL CHEMISTRY, 13 (1). pp. 2-4. ISSN 1568-0266

Abrusán, György and Zhang, Yang and Szilágyi, András (2013) Structure Prediction and Analysis of DNA Transposon and LINE Retrotransposon Proteins. JOURNAL OF BIOLOGICAL CHEMISTRY, 288 (22). pp. 16127-16138. ISSN 0021-9258

Abrusán, György and Zhang, Yang and Szilágyi, András (2013) Structure Prediction and Analysis of DNA Transposon and LINE Retrotransposon Proteins. Journal of Biological Chemistry, 288 (22). pp. 16127-16138. ISSN 0021-9258 (print) 1083-351X (online)

Abrusán, György and Szilágyi, András and Zhang, Yang and Papp, Balázs (2013) Turning gold into 'junk': transposable elements utilize central proteins of cellular networks. Nucleic Acids Research, 41 (5). pp. 3190-3200. ISSN 0305-1048 (print), 1362-4962 (online)

Némethy, Árpád and Solti, Katalin and Kiss, Lóránd and Gyarmati, Benjámin and Deli, Mária Anna and Csányi, Erzsébet and Szilágyi, András (2013) pH- and temperature-responsive poly(aspartic acid)-l-poly(N-isopropylacrylamide) conetwork hydrogel. EUROPEAN POLYMER JOURNAL, 49 (9). pp. 2392-2403. ISSN 0014-3057

Chetty, A. and Kovács, János and Sulyok, Zsolt and Mészáros, Á. and Fekete, Jenő and Domján, Attila and Szilágyi, András and Vargha, Viktória (2013) A versatile characterization of poly(N-isopropylacrylamideco- N,N'-methylene-bis-acrylamide) hydrogels for composition, mechanical strength, and rheology. eXPRESS Polymer Letters, 7 (1). pp. 95-105. ISSN 1788-618X

Szilágyi, András and Kun, Ádám and Szathmáry, Eörs (2012) Early evolution of efficient enzymes and genome organization. Biology Direct, 7 (1). p. 38. ISSN 1745-6150

Monograph

Závodszky, Péter and Barna, László and Beinrohr, László and Cseh, Sándor and Cseh-Szilágyi, Katalin and Dobó, József and Gál, Péter and Gráczer, Éva and Gyimesi, Gergely and Györffy, Dániel and Hajdú, István and Kamondi, Szilárd and Kazinczyné Dr. Vas, Mária and Kocsis, Andrea and Lorincz, Zsolt and Major, Balázs and Matkovicsné Dr. Varga, Andrea and Megyeri, Márton and Perbiróné Szabó, Judit and Pollnerné Flachner, Beáta and Sajó, Ráchel and Szaszkó, Mária and Szilágyi, András and Varga, János and Végh, Barbara Márta and Vonderviszt, Ferenc (2013) Fehérjék konformációs dinamikája mint a biomolekuláris felismerés és jelátvitel meghatározó eleme = Protein conformational dynamics as a key determinant in biomolecular recognition and signal transmission. Project Report. OTKA.

Szathmáry, Eörs and Ari, Eszter and Benedek, Zsófia and Kun, Ádám and Müller, Viktor and Szilágyi, András and Tlasné Jakó, Éena and Vasas, Vera (2012) Az élet keletkezésének és jelenkori modellorganizmusok evolúciójának számítógépes vizsgálata = Computational study of evolution in early life and extant model organisms. Project Report. OTKA.

Szilágyi, András (2011) A fehérjeszerkezetek eredete = The Origins of Protein Structures. Project Report. OTKA.

Meszéna, Géza and Oborny, Beáta and Pásztor, Erzsébet and Szabó, Péter and Szilágyi, András and Vukov, Jeromos (2009) Adaptív ökológia változó környezetben = Adaptive ecology in variable environment. Project Report. OTKA.

Apagyi, Barnabás and Horváth, Miklós and Lévay, Péter Pál and Schumayer, Dániel and Szilágyi, András (2009) Inverz szóráselméleti kutatások = Problems of inverse scattering theory. Project Report. OTKA.

Závodszky, Péter and Barna, László and Csala, Zoltán and Hajdú, István and Kamondi, Szilárd and Kulcsár, Péter and Németh, Attila and Szilágyi, András (2008) Összefüggés a fehérjék stabilitása, konformációs flexibilitása és működése között = Relationship between stability, conformational flexibility and function of proteins. Project Report. OTKA.