Items where Author is "Pál, Csaba"

Article

Martins, Ana and Judák, Fanni Orsolya and Farkas, Zoltán and Szili, Petra and Grézal, Gábor and Csörgő, Bálint and Czikkely, Márton Simon and Maharramov, Elvin and Daruka, Lejla and Spohn, Réka and Balogh, Dávid and Daraba, Andreea and Juhász, Szilvia and Vágvölgyi, Máté and Hunyadi, Attila and Cao, Yihui and Sun, Zhenquan and Li, Xuechen and Papp, Balázs and Pál, Csaba (2025) Antibiotic candidates for Gram-positive bacterial infections induce multidrug resistance. SCIENCE TRANSLATIONAL MEDICINE, 17 (780). No.-eadl2103. ISSN 1946-6234

Nath Bhaumik, Kaushik and Spohn, Réka and Dunai, Anett and Daruka, Lejla and Olajos, Gábor and Zákány, Florina and Hetényi, Anasztázia and Pál, Csaba and Martinek, Tamás (2024) Chemically diverse antimicrobial peptides induce hyperpolarization of the E. coli membrane. COMMUNICATIONS BIOLOGY, 7 (1). No.-1264. ISSN 2399-3642

Koncz, Mihály and Stirling, Tamás and Hadj Mehdi, Hiba and Méhi, Orsolya Katinka and Eszenyi, Bálint Dénes and Asbóth, András and Apjok, Gábor and Tóth, Ákos and Orosz, László and Vásárhelyi, Bálint Márk and Ari, Eszter and Daruka, Lejla and Polgár, Tamás Ferenc and Schneider, György and Zalokh, Sif Aldin and Számel, Mónika and Fekete, Gergely and Bohár, Balázs and Nagy Varga, Karolina and Visnyovszki, Ádám and Székely, Edit and Licker, Monica-Sorina and Izmendi, Oana and Costache, Carmen and Gajic, Ina and Lukovic, Bojana and Molnár, Szabolcs and Szőcs-Gazdi, Uzonka Orsolya and Bozai, Csilla and Indreas, Marina and Pál, Csaba and Papp, Balázs and Kintses, Bálint (2024) Genomic surveillance as a scalable framework for precision phage therapy against antibiotic-resistant pathogens. CELL, 187. pp. 1-18. ISSN 0092-8674 (In Press)

Cotman, Andrej Emanuel and Fulgheri, Federica and Piga, Martina and Persolja, Peter and Tiz, Davide Benedetto and Skok, Ziga and Durcik, Martina and Sterle, Masa and Dernovsek, Jaka and Cruz, Cristina D. and Tammela, Paivi and Szili, Petra and Daruka, Lejla and Pál, Csaba and Zega, Anamarija and Masic, Lucija Peterlin and Ilas, Janez and Tomasic, Tihomir and Kikelj, Danijel and Zidar, Nace (2024) New N-phenylpyrrolamide inhibitors of DNA gyrase with improved antibacterial activity. RSC ADVANCES, 14 (39). pp. 28423-28454. ISSN 2046-2069

Apjok, Gábor and Számel, Mónika and Christodoulou, Chryso and Seregi, Viktória and Vásárhelyi, Bálint Márk and Stirling, Tamás and Eszenyi, Bálint and Sári, Tóbiás and Vidovics, Fanni and Nagrand, Erika and Kovács, Dorina and Szili, Petra and Lantos, Ildikó Ilona and Méhi, Orsolya Katinka and Jangir, Pramod Kumar and Herczeg, Róbert and Gálik, Bence and Urbán, Péter and Gyenesei, Attila and Draskovits, Gábor and Nyerges, Ákos and Fekete, Gergely and Bodai, László and Zsindely, Nóra and Dénes, Béla and Yosef, Ido and Qimron, Udi and Papp, Balázs and Pál, Csaba and Kintses, Bálint (2023) Characterization of antibiotic resistomes by reprogrammed bacteriophage-enabled functional metagenomics in clinical strains. NATURE MICROBIOLOGY, 8 (3). pp. 410-423. ISSN 2058-5276

Sterle, Masa and Durcik, Martina and Stevenson, Clare E. M. and Henderson, Sara R. and Szili, Petra and Czikkely, Márton Simon and Pál, Csaba (2023) Exploring the 5-Substituted 2-Aminobenzothiazole-Based DNA Gyrase B Inhibitors Active against ESKAPE Pathogens. ACS OMEGA, 8. pp. 24387-24395. ISSN 2470-1343

Pál, Csaba and Papp, Balázs (2023) How Selection Shapes the Short- and Long-Term Dynamics of Molecular Evolution. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 120 (33). No.-2311012120. ISSN 0027-8424 (print); 1091-6490 (online)

Durcik, Martina and Cotman, Andrej Emanuel and Toplak, Žan and Možina, Štefan and Skok, Žiga and Szili, Petra Éva and Czikkely, Márton and Maharramov, Elvin and Vu, Thu Hien and Pál, Csaba (2023) New Dual Inhibitors of Bacterial Topoisomerases with Broad-Spectrum Antibacterial Activity and in vivo Efficacy Against Vancomycin-Intermediate Staphylococcus aureus. JOURNAL OF MEDICINAL CHEMISTRY, 66 (6). pp. 3968-3994. ISSN 0022-2623 (print); 1520-4804 (online)

Grézal, Gábor and Spohn, Réka and Méhi, Orsolya Katinka and Dunai, Anett and Lázár, Viktória and Bálint, Balázs and Nagy, István and Pál, Csaba and Papp, Balázs (2023) Plasticity and stereotypic rewiring of the transcriptome upon bacterial evolution of antibiotic resistance. MOLECULAR BIOLOGY AND EVOLUTION, 40 (2). No-msad020. ISSN 0737-4038

Jangir, Pramod Kumar and Ogunlana, Lois and Szili, Petra and Czikkely, Márton Simon and Shaw, Liam P and Stevens, Emily J and Yu, Yang and Yang, Qiue and Wang, Yang and Pál, Csaba and Walsh, Timothy R and MacLean, Craig R (2023) The evolution of colistin resistance increases bacterial resistance to host antimicrobial peptides and virulence. ELIFE, 12. No-e84395. ISSN 2050-084X

Farkas, Zoltán and Kovács, Károly and Sarkadi, Zsuzsa and Kalapis, Dorottya and Fekete, Gergely and Birtyik, Fanni and Ayaydin, Ferhan and Molnár, Csaba and Horváth, Péter and Pál, Csaba and Papp, Balázs (2022) Gene loss and compensatory evolution promotes the emergence of morphological novelties in budding yeast. NATURE ECOLOGY & EVOLUTION, 6 (6). pp. 763-773. ISSN 2397-334X

Györkei, Ádám and Daruka, Lejla and Balogh, Dávid and Őszi, Erika and Magyar, Zoltán and Szappanos, Balázs and Fekete, Gergely and Fuxreiter, Mónika and Horváth, Péter and Pál, Csaba and Kintses, Bálint and Papp, Balázs (2022) Proteome-Wide Landscape of Solubility Limits in a Bacterial Cell. SCIENTIFIC REPORTS, 12. pp. 1-13. ISSN 2045-2322

Nath Bhaumik, Kaushik and Hetényi, Anasztázia and Olajos, Gábor and Martins, Ana and Spohn, Réka and Németh, Lukács and Jójárt, Balázs and Szili, Petra and Dunai, Anett and Jangir, Pramod K. and Daruka, Lejla and Földesi, Imre and Kata, Diána and Pál, Csaba and Martinek, Tamás A. (2022) Rationally Designed Foldameric Adjuvants Enhance Antibiotic Efficacy via Promoting Membrane Hyperpolarization. MOLECULAR SYSTEMS DESIGN & ENGINEERING : A MOLECULAR ENGINEERING JOURNAL, 7 (1). pp. 21-33. ISSN 2058-9689

Manczinger, Máté and Koncz, Balázs and Balogh, Gergő and Papp, Benjamin and Asztalos, Leó and Kemény, Lajos and Papp, Balázs and Pál, Csaba (2021) Negative trade-off between neoantigen repertoire breadth and the specificity of HLA-I molecules shapes antitumor immunity. Nature Cancer. ISSN 2662-1347 (online)

Durcik, Martina and Skok, Žiga and Ilaš, Janez and Zidar, Nace and Zega, Anamarija and Szili, Petra Éva and Draskovits, Gábor and Révész, Tamás and Nyerges, Ákos and Pál, Csaba (2021) Hybrid Inhibitors of DNA Gyrase A and B: Design, Synthesis and Evaluation. PHARMACEUTICS, 13 (1). pp. 1-17. ISSN 1999-4923

Durcik, Martina and Nyerges, Ákos and Skok, Žiga and Gramec Skledar, Darja and Trontelj, Jurij and Révész, Tamás and Draskovits, Gábor and Szili, Petra Éva and Daruka, Lejla and Pál, Csaba (2021) New Dual ATP-Competitive Inhibitors of Bacterial DNA Gyrase and Topoisomerase IV Active Against ESKAPE Pathogens. EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 213. pp. 1-22. ISSN 0223-5234 (print); 1768-3254 (online)

Wannier, Timothy M. and Ciaccia, Peter N. and Ellington, Andrew D. and Filsinger, Gabriel T. and Isaacs, Farren J. and Pál, Csaba (2021) Recombineering and MAGE. NATURE REVIEWS METHODS PRIMERS, 1. ISSN 2662-8449

Fois, Benedetta and Skok, Ziga and Tomasic, Tihomir and Ilaš, Janez and Zidar, Nace and Szili, Petra and Draskovits, Gábor and Nyerges, Ákos and Pál, Csaba (2020) Dual Escherichia coli DNA Gyrase A and B Inhibitors with Antibacterial Activity. CHEMMEDCHEM, 15 (3). pp. 265-269. ISSN 1860-7179

Bálint, Anita and Farkas, Klaudia and Méhi, Orsolya and Kintses, Bálint and Vásárhelyi, Bálint Márk and Ari, Eszter and Pál, Csaba and Madácsy, Tamara and Maléth, József and Szántó, Kata Judit and Nagy, István and Rutka, Mariann and Bacsur, Péter and Szűcs, Diána and Szepes, Zoltán and Nagy, Ferenc and Fábián, Anna and Bor, Renáta and Milassin, Ágnes and Molnár, Tamás (2020) Functional Anatomical Changes in Ulcerative Colitis Patients Determine Their Gut Microbiota Composition and Consequently the Possible Treatment Outcome. PHARMACEUTICALS, 13. No.-346. ISSN 1424-8247

Wannier, Timothy M. and Nyerges, Ákos and Kuchwara, Helene M. and Czikkely, Márton and Balogh, Dávid and Pál, Csaba (2020) Improved bacterial recombineering by parallelized protein discovery. Proceedings of the National Academy of Sciences, 117 (24). pp. 13689-13698. ISSN 0027-8424

Hueso-Gil, Angeles and Nyerges, Ákos and Pál, Csaba and Calles, Belén and de Lorenzo, Victor (2020) Multiple-Site Diversification of Regulatory Sequences Enables Interspecies Operability of Genetic Devices. ACS SYNTHETIC BIOLOGY, 9 (1). pp. 104-114. ISSN 2161-5063

Nyerges, Ákos and Tomašič, Tihomir and Durcik, Martina and Révész, Tamás and Szili, Petra and Draskovits, Gábor and Bogár, Ferenc and Daruka, Lejla and Kintses, Bálint and Vásárhelyi, Bálint and Földesi, Imre and Kata, Diána and Pál, Csaba (2020) Rational design of balanced dual-targeting antibiotics with limited resistance. PLOS BIOLOGY, 18 (10). pp. 1-31. ISSN 1544-9173 (print); 1545-7885 (online)

Lamut, Andraž and Skok, Žiga and Barančoková, Michaela and Gutierrez, Lucas J. and Cruz, Cristina D. and Draskovits, Gábor and Szili, Petra Éva and Nyerges, Ákos and Pál, Csaba (2020) Second generation 4,5,6,7-tetrahydrobenzo[d]thiazoles as novel DNA gyrase inhibitors. FUTURE MEDICINAL CHEMISTRY, 12 (4). pp. 277-297. ISSN 1756-8919 (print); 1756-8927 (online)

Kovács, Károly and Farkas, Zoltán and Bajić, Djordje and Kalapis, Dorottya and Daraba, Andreea and Almási, Karola and Kintses, Bálint and Bódi, Zoltán and Notebaart, Richard A and Poyatos, Juan F and Kemmeren, Patrick and Holstege, Frank C P and Pál, Csaba and Papp, Balázs (2020) Suboptimal Global Transcriptional Response Increases the Harmful Effects of Loss-of-Function Mutations. Molecular biology and evoltuion, 38 (3). pp. 1137-1150. ISSN 1537-1719

Csörgő, Bálint and Nyerges, Ákos and Pál, Csaba (2020) Targeted Mutagenesis of Multiple Chromosomal Regions in Microbes. CURRENT OPINION IN MICROBIOLOGY, 57. pp. 22-30. ISSN 1369-5274

Szili, Petra and Draskovits, Gábor and Révész, Tamás and Bogár, Ferenc and Balogh, Dávid and Martinek, Tamás and Daruka, Lejla and Spohn, Réka and Vásárhelyi, Bálint Márk and Czikkely, Márton and Kintses, Bálint and Grézal, Gábor and Ferenc, Györgyi and Pál, Csaba and Nyerges, Ákos (2019) Rapid evolution of reduced susceptibility against a balanced dual targeting antibiotic through stepping-stone mutations. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY. ISSN 0066-4804

Kintses, Bálint and Méhi, Orsolya Katinka and Ari, Eszter and Számel, Mónika and Györkei, Ádám and Jangir, Pramod Kumar and Nagy, István and Pál, Ferenc and Fekete, Gergely and Tengölics, Roland and Nyerges, Ákos and Likó, István and Bálint, Anita and Molnár, Tamás and Vásárhelyi, Bálint Márk and Bustamante, Misshelle and Papp, Balázs and Pál, Csaba (2019) Phylogenetic barriers to horizontal transfer of antimicrobial peptide resistance genes in the human gut microbiota. NATURE MICROBIOLOGY. ISSN 2058-5276

Nyerges, Ákos and Bálint, Balázs and Cseklye, Judit and Nagy, István and Pál, Csaba and Fehér, Tamás (2019) CRISPR-interference-based modulation of mobile genetic elements in bacteria. Synthetic biology (Oxford, England), 4 (1). ISSN 2397-7000

Kintses, Bálint and Jangir, Pramod Kumar and Fekete, Gergely and Számel, Mónika and Méhi, Orsolya Katinka and Spohn, Réka and Daruka, Lejla and Martins, Ana and Csörgő, Bálint and Györkei, Ádám and Ari, Eszter and Lázár, Viktória and Nagy, István and Pál, Csaba and Papp, Balázs (2019) Chemical-genetic profiling reveals limited cross-resistance between antimicrobial peptides with different modes of action. NATURE COMMUNICATIONS, 10. pp. 1-13. ISSN 2041-1723

Bocsik, Alexandra and Gróf, Ilona and Kiss, Lóránd and Ötvös, Ferenc and Zsíros, Ottó and Daruka, Lejla and Kittel, Ágnes and Imre, Norbert and Pál, Csaba and Deli, Mária Anna (2019) Dual Action of the PN159/KLAL/MAP Peptide. Pharmaceutics, 11 (2). ISSN 1999-4923

Guzmán, Gabriela I and Sandberg, Troy E and LaCroix, Ryan A and Nyerges, Ákos and Papp, Henrietta and de Raad, Markus and King, Zachary A and Hefner, Ying and Northen, Trent R and Notebaart, Richard A. and Pál, Csaba and Palsson, Bernhard O and Papp, Balázs and Feist, Adam M (2019) Enzyme promiscuity shapes adaptation to novel growth substrates. Molecular Systems Biology, 15 (4). ISSN 1744-4292, ESSN: 1744-4292

Kaminski Strauss, Sivan and Schirman, Dvir and Jona, Ghil and Brooks, Aaron N. and Kunjapur, Aditya M. and Csörgő, Bálint and Pál, Csaba (2019) Evolthon. PLOS BIOLOGY, 17 (3). ISSN 1544-9173

Spohn, Réka and Daruka, Lejla and Lázár, Viktória and Martins, Ana and Vidovics, Fanni and Grézal, Gábor and Méhi, Orsolya Katinka and Kintses, Bálint and Számel, Mónika and Jangir, Pramod Kumar and Csörgő, Bálint and Györkei, Ádám and Bódi, Zoltán and Faragó, Anikó and Bodai, László and Földesi, Imre and Kata, Diána and Maróti, Gergely and Pap, Bernadett and Wirth, Roland and Papp, Balázs and Pál, Csaba (2019) Integrated evolutionary analysis reveals antimicrobial peptides with limited resistance. NATURE COMMUNICATIONS, 10. No.-4538. ISSN 2041-1723

Apjok, Gábor and Boross, Gábor and Nyerges, Ákos and Fekete, Gergely and Lázár, Viktória and Papp, Balázs and Pál, Csaba and Csörgő, Bálint (2019) Limited evolutionary conservation of the phenotypic effects of antibiotic resistance mutations. MOLECULAR BIOLOGY AND EVOLUTION, 36 (8). pp. 1601-1611. ISSN 0737-4038

Aparicio, Tomas and Nyerges, Ákos and Nagy, István and Pál, Csaba and Martinez-Garcia, Esteban (2019) Mismatch repair hierarchy of Pseudomonas putida revealed by mutagenic ssDNA recombineering of the pyrF gene. ENVIRONMENTAL MICROBIOLOGY. pp. 1-35. ISSN 1462-2912

Manczinger, Máté and Boross, Gábor and Kemény, Lajos and Müller, Viktor and Lenz, Tobias L. and Papp, Balázs and Pál, Csaba (2019) Pathogen diversity drives the evolution of generalist MHC-II alleles in human populations. PLOS BIOLOGY, 17 (1). ISSN 1544-9173

Kintses, Bálint and Méhi, Orsolya Katinka and Ari, Eszter and Számel, Mónika and Györkei, Ádám and Jangir, Pramod Kumar and Nagy, István and Pál, Ferenc and Fekete, Gergely and Tengölics, Roland and Nyerges, Ákos and Likó, István and Bálint, Anita and Molnár, Tamás and Bálint, Balázs and Vásárhelyi, Bálint Márk and Bustamante, Misshelle and Papp, Balázs and Pál, Csaba (2019) Phylogenetic barriers to horizontal transfer of antimicrobial peptide resistance genes in the human gut microbiota. NATURE MICROBIOLOGY, 4 (3). pp. 447-458. ISSN 2058-5276

Szili, Petra and Draskovits, Gábor and Révész, Tamás and Bogár, Ferenc and Balogh, Dávid and Martinek, Tamás and Daruka, Lejla and Spohn, Réka and Vásárhelyi, Bálint Márk and Czikkely, Márton and Kintses, Bálint and Grézal, Gábor and Ferenc, Györgyi and Pál, Csaba and Nyerges, Ákos (2019) Rapid Evolution of Reduced Susceptibility against a Balanced Dual-Targeting Antibiotic through Stepping-Stone Mutations. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 63 (9). pp. 1-39. ISSN 0066-4804 (print); 1098-6596 (online)

Dunai, Anett and Spohn, Réka and Farkas, Zoltán and Lázár, Viktória and Györkei, Ádám and Apjok, Gábor and Boross, Gábor and Szappanos, Balázs and Grézal, Gábor and Faragó, Anikó and Papp, Balázs and Pál, Csaba (2019) Rapid decline of bacterial drug-resistance in an antibiotic-free environment through phenotypic reversion. ELIFE, 8. ISSN 2050-084X

Tiz, Davide Benedetto and Skok, Ziga and Durcik, Martina and Tomasic, Tihomir and Peterlin Masic, Lucija and Draskovits, Gábor and Révész, Tamás and Nyerges, Ákos and Pál, Csaba (2019) An optimised series of substituted N-phenylpyrrolamides as DNA gyrase B inhibitors. EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 167. pp. 269-290. ISSN 0223-5234

Nyerges, Ákos and Csörgő, Bálint and Draskovits, Gábor and Kintses, Bálint and Szili, Petra and Ferenc, Györgyi and Révész, Tamás and Ari, Eszter and Nagy, István and Bálint, Balázs and Vásárhelyi, Bálint and Bihari, Péter and Számel, Mónika and Balogh, Dávid and Papp, Henrietta and Kalapis, Dorottya and Papp, Balázs and Pál, Csaba (2018) Directed evolution of multiple genomic loci allows the prediction of antibiotic resistance. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 115 (25). E5726-E5735. ISSN 0027-8424

Natan, Eviatar and Endoh, Endoh and Haim-Vilmovsky, Liora and Flock, Tilman and Chalancon, Guilhem and Hopper, Jonathan and Kintses, Bálint and Horváth, Péter and Daruka, Lejla and Fekete, Gergely and Pál, Csaba and Papp, Balázs and Őszi, Erika and Magyar, Zoltán (2018) Cotranslational protein assembly imposes evolutionary constraints on homomeric proteins. Nature Structural and Molecular Biology, 25. pp. 279-288. ISSN 1545-9993, ESSN: 1545-9985

Lázár, Viktória and Martins, Ana and Spohn, Réka and Daruka, Lejla and Grézal, Gábor and Fekete, Gergely and Számel, Mónika and Jangir, Pramod Kumar and Kintses, Bálint and Csörgő, Bálint and Nyerges, Ákos and Györkei, Ádám and Kincses, András and Dér, András and Walter, Fruzsina and Deli, Mária Anna and Zsoldiné Urbán, Edit and Hegedűs, Zoltán and Méhi, Orsolya Katinka and Bálint, Balázs and Nagy, István and Martinek, Tamás and Papp, Balázs and Pál, Csaba (2018) Antibiotic-resistant bacteria show widespread collateral sensitivity to antimicrobial peptides. NATURE MICROBIOLOGY, 3 (6). pp. 718-731. ISSN 2058-5276

Nyerges, Ákos and Csörgő, Bálint and Draskovits, Gábor and Kintses, Bálint and Szili, Petra and Ferenc, Györgyi and Révész, Tamás and Ari, Eszter and Nagy, István and Bálint, Balázs and Vásárhelyi, Bálint Márk and Bihari, Péter and Számel, Mónika and Balogh, Dávid and Papp, Henrietta and Kalapis, Dorottya and Papp, Balázs and Pál, Csaba (2018) Directed evolution of multiple genomic loci allows the prediction of antibiotic resistance. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 115 (25). E5726-E5735. ISSN 0027-8424

Durcik, M. and Lovison, D. and Skok, Z. and Cruz, C. D. and Tammela, P. and Draskovits, Gábor and Nyerges, Ákos and Pál, Csaba (2018) New N-phenylpyrrolamide DNA gyrase B inhibitors: Optimization of efficacy and antibacterial activity. EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 154. pp. 117-132. ISSN 0223-5234

Pál, Csaba and Papp, Balázs (2017) Evolution of complex adaptations in molecular systems. NATURE ECOLOGY & EVOLUTION, 1. pp. 1085-1092. ISSN 2397-334X

Umenhoffer, Kinga and Draskovits, Gábor and Nyerges, Ákos and Karcagi, Ildikó and Bogos, Balázs and Tímár, Edit and Csörgő, Bálint and Nagy, István and Fehér, Tamás and Pál, Csaba and Pósfai, György (2017) Genome-Wide Abolishment of Mobile Genetic Elements Using Genome Shuffling and CRISPR/Cas-Assisted MAGE Allows the Efficient Stabilization of a Bacterial Chassis. ACS SYNTHETIC BIOLOGY, 6 (8). pp. 1471-1483. ISSN 2161-5063

Bódi, Zoltán and Farkas, Zoltán and Nevozhay, D. and Kalapis, Dorottya and Lázár, Viktória and Csörgő, Bálint and Nyerges, Ákos and Szamecz, Béla and Fekete, Gergely and Papp, Balázs and Pál, Csaba (2017) Phenotypic heterogeneity promotes adaptive evolution. PLOS BIOLOGY, 15 (5). pp. 1-26. ISSN 1544-9173

Szappanos, Balázs and Fritzemeier, J. and Csörgő, Bálint and Lázár, Viktória and Lu, X. and Fekete, Gergely and Herczeg, Róbert and Nagy, István and Pál, Csaba and Papp, Balázs (2016) Adaptive evolution of complex innovations through stepwise metabolic niche expansion. NATURE COMMUNICATIONS, 7. pp. 1-10. ISSN 2041-1723

Diao, Junchen and Charlebois, Daniel and Neyozhay, Dmitry and Bódi, Zoltán and Pál, Csaba and Balázsi, Gábor (2016) Efflux Pump Control Alters Synthetic Gene Circuit Function. ACS SYNTHETIC BIOLOGY, 5 (7). pp. 619-631. ISSN 2161-5063

Karcagi, Ildikó and Draskovits, Gábor and Umenhoffer, Kinga and Fekete, Gergely and Kovács, Károly and Méhi, Orsolya Katinka and Balikó, Gabriella and Szappanos, Balázs and Győrfy, Zsuzsanna and Fehér, Tamás and Bogos, Balázs and Pál, Csaba and Pósfai, György and Papp, Balázs (2016) Indispensability of Horizontally Transferred Genes and Its Impact on Bacterial Genome Streamlining. MOLECULAR BIOLOGY AND EVOLUTION, 33 (5). pp. 1257-1269. ISSN 0737-4038

Nyerges, Ákos and Csörgő, Bálint and Nagy, István and Bálint, Balázs and Bihari, Péter and Lázár, Viktória and Apjok, Gábor and Umenhoffer, Kinga and Bogos, Balázs and Pósfai, György and Pál, Csaba (2016) A highly precise and portable genome engineering method allows comparison of mutational effects across bacterial species. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 113 (9). pp. 2502-2507. ISSN 0027-8424

Kalapis, Dorottya and Bezerra, Ana R and Farkas, Zoltán and Horvath, Peter and Bódi, Zoltán and Daraba, Andreea and Szamecz, Béla and Gut, Ivo and Bayes, Mónica and Santos, Manuel A S and Pál, Csaba (2015) Evolution of Robustness to Protein Mistranslation by Accelerated Protein Turnover. PLoS biology, 13 (11). pp. 1-28. ISSN 1545-7885

Pál, Csaba and Papp, Balázs and Lázár, Viktória (2015) Collateral sensitivity of antibiotic-resistant microbes. TRENDS IN MICROBIOLOGY, 23 (7). pp. 401-407. ISSN 0966-842X

Ebrahim, A. and Almaas, E. and Bauer, E. and Bordbar, A. and Burgard, A. P. and Pál, Csaba (2015) Do genome-scale models need exact solvers or clearer standards? MOLECULAR SYSTEMS BIOLOGY, 11 (10). p. 3. ISSN 1744-4292

Kalapis, Dorottya and Bezerra, Ana R. and Farkas, Zoltán and Horváth, Péter and Bódi, Zoltán and Daraba, Andrea and Szamecz, Béla and Pál, Csaba (2015) Evolution of Robustness to Protein Mistranslation by Accelerated Protein Turnover. PLOS BIOLOGY, 13 (11). pp. 1-28. ISSN 1544-9173

Szamecz, Béla and Boross, Gábor and Kalapis, Dorottya and Kovács, Károly and Fekete, Gergely and Farkas, Zoltán and Lázár, Viktória and Hrtyan, Mónika and Kemmeren, Patrick and Groot Koerkamp, Marian J. A. and Rutkai, Edit and Holstege, Frank C. P. and Papp, Balázs and Pál, Csaba (2014) The genomic landscape of compensatory evolution. PLoS biology, 12 (8). e1001935. ISSN 1545-7885

Nyerges, Ákos and Csorgő, Bálint and Nagy, István and Latinovics, Dóra and Szamecz, Béla and Pósfai, György and Pál, Csaba (2014) Conditional DNA repair mutants enable highly precise genome engineering. NUCLEIC ACIDS RESEARCH, 42 (8). e62. ISSN 0305-1048

Ocampo, P. S. and Lázár, Viktória and Papp, Balázs and Arnoldini, M. and zur Wiesch, P. A. and Fekete, Gergely and Pál, Csaba (2014) Antagonism between Bacteriostatic and Bactericidal Antibiotics Is Prevalent. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 58 (8). pp. 4573-4582. ISSN 0066-4804

Lázár, Viktória and Nagy, István and Spohn, Réka and Csörgő, Bálint and Györkei, Ádám and Nyerges, Ákos and Horváth, Balázs and Vörös, Andrea and Hrtyan, Mónika and Bogos, Balázs and Méhi, Orsolya Katinka and Fekete, Gergely and Szappanos, Balázs and Papp, Balázs and Pál, Csaba (2014) Genome-wide analysis captures the determinants of the antibiotic cross-resistance interaction network. Nature communications, 5. p. 4352. ISSN 2041-1723

Szamecz, Béla and Boross, Gábor and Kalapis, Dorottya and Kovács, Károly and Fekete, Gergely and Farkas, Zoltán and Lázár, Viktória and Hrtyan, Mónika and Papp, Balázs and Pál, Csaba (2014) The Genomic Landscape of Compensatory Evolution. PLOS BIOLOGY, 12 (8). pp. 1-16. ISSN 1544-9173

Notebaart, R. A. and Szappanos, Balázs and Kintses, Bálint and Pál, Ferenc and Györkei, Ádám and Bogos, Balázs and Lázár, Viktória and Spohn, Réka and Csörgő, Bálint and Pál, Csaba and Papp, Balázs (2014) Network-level architecture and the evolutionary potential of underground metabolism. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 111 (32). pp. 11762-11767. ISSN 0027-8424

Méhi, Orsolya Katinka and Bogos, Balázs and Csörgő, Bálint and Pál, Ferenc and Nyerges, Ákos and Papp, Balázs and Pál, Csaba (2014) Perturbation of iron homeostasis promotes the evolution of antibiotic resistance. MOLECULAR BIOLOGY AND EVOLUTION, 31 (10). pp. 2793-2804. ISSN 0737-4038

Pál, Csaba and Papp, Balázs and Pósfai, György (2014) The dawn of evolutionary genome engineering. NATURE REVIEWS GENETICS, 15 (7). pp. 504-512. ISSN 1471-0056

Lázár, Viktória and Singh, Gajinder Pal and Spohn, Réka and Nagy, István and Horváth, Balázs and Hrtyan, Mónika and Busa-Fekete, Róbert and Bogos, Balázs and Méhi, Orsolya Katinka and Csörgő, Bálint and Pósfai, György and Fekete, Gergely and Szappanos, Balázs and Papp, Balázs and Pál, Csaba (2013) Bacterial evolution of antibiotic hypersensitivity. MOLECULAR SYSTEMS BIOLOGY, 9. p. 700. ISSN 1744-4292

Pál, Csaba and Papp, Balázs (2013) From passengers to drivers: Impact of bacterial transposable elements on evolvability. MOBILE GENETIC ELEMENTS, 3 (1). pp. 1-4. ISSN 2159-2543

Méhi, Orsolya Katinka and Bogos, Balázs and Csörgő, Bálint and Pál, Csaba (2013) Genomewide Screen for Modulators of Evolvability under Toxic Antibiotic Exposure. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 57 (7). pp. 3453-3456. ISSN 0066-4804

Fehér, Tamás and Bogos, Balázs and Méhi, Orsolya Katinka and Fekete, Gergely and Csörgő, Bálint and Kovács, Károly and Pósfai, György and Papp, Balázs and Pál, Csaba (2012) Competition between Transposable Elements and Mutator Genes in Bacteria. MOLECULAR BIOLOGY AND EVOLUTION, 29 (10). pp. 3153-3159. ISSN 0737-4038

Papp, Balázs and Notebaart, R. A. and Pál, Csaba (2011) Systems-biology approaches for predicting genomic evolution. NATURE REVIEWS GENETICS, 12 (9). pp. 591-602. ISSN 1471-0056

Szappanos, Balázs and Kovács, Károly and Szamecz, Béla and Honti, Frantisek and Costanzo, Michael and Jelasity, Márk and Pál, Csaba and Papp, Balázs (2011) An integrated approach to characterize genetic interaction networks in yeast metabolism. NATURE GENETICS, 43 (7). pp. 656-662. ISSN 1061-4036

Pál, Csaba and Maciá, María D. and Oliver, Antonio and Schachar, Ira and Buckling, Angus (2007) Coevolution with viruses drives the evolution of bacterial mutation rates. NATURE, 450 (7172). pp. 1079-1081. ISSN 0028-0836

Pál, Csaba and Papp, Balázs and Lercher, Martin J. (2005) Adaptive evolution of bacterial metabolic networks by horizontal gene transfer. NATURE GENETICS, 37 (12). pp. 1372-1375. ISSN 1061-4036

Papp, Balázs and Pál, Csaba and Hurst, Laurence D. (2004) Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast. NATURE, 429. pp. 661-664. ISSN 0028-0836

Papp, Balázs and Pál, Csaba and Hurst, Laurence D. (2003) Dosage sensitivity and the evolution of gene families in yeast. NATURE, 424 (6945). pp. 194-197. ISSN 0028-0836

Pál, Csaba and Papp, Balázs and Hurst, Laurence D. (2001) Highly expressed genes in yeast evolve slowly. GENETICS, 158 (2). pp. 927-931. ISSN 0016-6731

Monograph

Pál, Csaba (2009) Kulcsfontosságú gének genomikai előrejelzése: In Silico megközelítés = Genomic prediction of essential genes: in silico approach. Project Report. OTKA.

Szathmáry, Eörs and Gedeon, Gábor and Kövér, Szilvia and Pál, Csaba and Papp, Balázs (2008) Az evolúció nagy lépései és robusztus genetikai rendszerek = Major transitions in evolution and robust genetic systems. Project Report. OTKA.

Conference or Workshop Item

Molnár, József and Tasnádi, Ervin and Kintses, Bálint and Farkas, Zoltán and Pál, Csaba and Horváth, Péter and Danka, Tivadar (2017) Active Surfaces for Selective Object Segmentation in 3D. In: 2017 International Conference on Digital Image Computing: Techniques and Applications (DICTA), 2017.11.29-2017.12.01, Sydney.